I've been using BreakDancer for structural variation, and it works pretty well, but I'm a little bit confused by some of the output. My understanding is that BreadDancer categorizes translocations as "CTX", but sometimes in my output I get lines like this:
1 121473724 521+551- 7 61995061 374+334- DEL 1822 99 230 LC_1|230 -38.93
Has anyone out there seen anything like that before? I was expecting that any calls that had coordinates on different chromosomes would be of type "CTX", and I'm not sure what a deletion ("DEL") with breakpoints on two different chromosomes means.
Thanks,
Chris
1 121473724 521+551- 7 61995061 374+334- DEL 1822 99 230 LC_1|230 -38.93
Has anyone out there seen anything like that before? I was expecting that any calls that had coordinates on different chromosomes would be of type "CTX", and I'm not sure what a deletion ("DEL") with breakpoints on two different chromosomes means.
Thanks,
Chris
Comment