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Old 08-04-2009, 01:32 AM   #1
Junior Member
Location: netherlands

Join Date: Apr 2009
Posts: 1
Default using sff_extract

being a newbie, I have a very simple question:

I am trying to convert sff formatted 454 data into fasta, fasta quality files and an xml files using sff_extract in python2.6 using the following command:

sff_extract -s proj_in.454.fasta -q proj_in.454.fasta.qual -x proj_traceinfo_in.454.xml FX3UAMY01.sff

this results in a syntax error. Does anyone have a suggestion what's wrong?

Thanks, Veronique
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