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Old 01-01-2013, 03:25 AM   #9
chayan
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Location: USA

Join Date: Nov 2012
Posts: 51
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I am new to this. I want to convert a iontorrent sff to fastq and xml for assembly with mira.
i used the commands:
sff_extract -s sample_in.iontor.fastq -x sample_traceinfo_in.iontor.xml sample.sff

and all the time getting the error msg
usage: sff_extract [-h] [-o OUTPUT] [-c] [--min_left_clip MIN_LEFT_CLIP]
[--max_percentage MAX_PERCENT] [--version]
[input [input ...]]
sff_extract: error: unrecognized arguments: -s -x sample_traceinfo_in.iontor.xml sample.sff

any help???
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