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Old 01-04-2013, 07:32 AM   #1
mathew
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Location: australia

Join Date: Jan 2011
Posts: 81
Default alignment of Miseq data

To identify presence and absence of a bacterial in clinical samples as well as sequence variation among various states of diseases if any; we recently generated 2X250bp miseq data. I used BWA it is not working. I was wondering what should be the best way to align to reference genome or any other suggestion how best I can achieve seq variations

Thanks

Last edited by mathew; 01-04-2013 at 07:43 AM.
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