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Old 03-08-2013, 07:49 AM   #1
Location: Norway

Join Date: Feb 2013
Posts: 39
Default Annotate diff files

Perhaps this is a better place to ask this question:

I've run cuffdiff on my RNA-Seq data using UCSC_Genes.gtf as my transcript reference, and looked at the file gene_exp.diff. Here I see that the columns test_id and gene_id are both based on UCSC gene IDs, of course. How do I annotate this output in such a way that I can also see Entrez gene IDs there?
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