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Old 06-19-2014, 08:17 AM   #10
Corydoras
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Location: Norwich

Join Date: Jan 2014
Posts: 20
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Hi Brian,

That worked like a charm, thank you! The normalization also greatly improved the assemblies and the kmer-coverage distribution looks much nicer. I was just wondering: by default, bbnorm will use a kmer of 31. But for my assembly I am using 41. The assembly works fine, but is it advisable to normalize the coverage using a kmer of 41?

Thanks,

Sarah
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