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Old 02-08-2017, 09:10 AM   #1
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Location: London

Join Date: Feb 2017
Posts: 4
Default Uneven coverage across scaffold


I have run the SMRT-Portal RS_HGAP_Assembly.2 protocol.
I am getting a single whole chromosome assembled (~4.4Mb) but there is uneven coverage across the scaffold.

See Figure:

Additionaly the start 15Kb and the 15Kb where the coverage drops is a repeat.

I am unsure how to interperate these results and I am wondering if there has been a misassembly.

Could anyone shed some light on this?
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