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Old 02-09-2017, 08:19 AM   #8
Location: Mountain Grove, MO, USA

Join Date: Apr 2014
Posts: 29

Ok, I did install and use this clumpify tool.
and it did not make any difference. it found some 300 duplicates, I assemble slightly fewer reads, to similar n50 and total nt count and of the contigs produced I had 1 less contig match than before.....
I have heard the term redundant vs non-redundant. just to make sure I understand: removing these duplicates would make my set of reads non-redundant? Or am I completely lost?
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