Hi,
Does anybody know how to convert Blast Output as below to a tabular (.csv) output or how to extract top hits? In the online tool that I use I can't select for tabular output.
Thanks!
Query= OsSNP0002
(142 letters)
Database: ../uniprot-oryza-sativa-indica.fasta
42,240 sequences; 15,872,719 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A2WJN5|A2WJN5_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-18
tr|B8AKP7|B8AKP7_ORYSI Putative uncharacterized protein OS=Oryza... 53 6e-17
tr|B8AEL6|B8AEL6_ORYSI Putative uncharacterized protein OS=Oryza... 28 1.5
tr|B8B114|B8B114_ORYSI Putative uncharacterized protein OS=Oryza... 28 2.0
tr|B8AQS5|B8AQS5_ORYSI Putative uncharacterized protein OS=Oryza... 27 2.6
tr|B8ADP7|B8ADP7_ORYSI Putative uncharacterized protein OS=Oryza... 27 4.4
tr|A2ZKU4|A2ZKU4_ORYSI Putative uncharacterized protein OS=Oryza... 26 7.5
tr|A2Y774|A2Y774_ORYSI Putative uncharacterized protein OS=Oryza... 26 7.5
tr|A2WXP8|A2WXP8_ORYSI Putative uncharacterized protein OS=Oryza... 25 9.7 [/SIZE][/SIZE]
Does anybody know how to convert Blast Output as below to a tabular (.csv) output or how to extract top hits? In the online tool that I use I can't select for tabular output.
Thanks!
Query= OsSNP0002
(142 letters)
Database: ../uniprot-oryza-sativa-indica.fasta
42,240 sequences; 15,872,719 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A2WJN5|A2WJN5_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-18
tr|B8AKP7|B8AKP7_ORYSI Putative uncharacterized protein OS=Oryza... 53 6e-17
tr|B8AEL6|B8AEL6_ORYSI Putative uncharacterized protein OS=Oryza... 28 1.5
tr|B8B114|B8B114_ORYSI Putative uncharacterized protein OS=Oryza... 28 2.0
tr|B8AQS5|B8AQS5_ORYSI Putative uncharacterized protein OS=Oryza... 27 2.6
tr|B8ADP7|B8ADP7_ORYSI Putative uncharacterized protein OS=Oryza... 27 4.4
tr|A2ZKU4|A2ZKU4_ORYSI Putative uncharacterized protein OS=Oryza... 26 7.5
tr|A2Y774|A2Y774_ORYSI Putative uncharacterized protein OS=Oryza... 26 7.5
tr|A2WXP8|A2WXP8_ORYSI Putative uncharacterized protein OS=Oryza... 25 9.7 [/SIZE][/SIZE]
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