Hello,
within the next months we want to start our own runs with the MinION.
___________________________
One question besides:
First I read that the reads are in hast5 format and have to be extracted with eg. poretools.
Then I read that the output data is in fastq format.
What output format is generated by MinION-sequencing?
___________________________
Anyway, what I'm really interested in is what Software-pipelines you guys use and what you can recommend for denovo Assembly, Alignment, (differential)gene-expression, snp/indel detection?
I already found this list: http://bioinformaticsonline.com/blog...-data-analysis
within the next months we want to start our own runs with the MinION.
___________________________
One question besides:
First I read that the reads are in hast5 format and have to be extracted with eg. poretools.
Then I read that the output data is in fastq format.
What output format is generated by MinION-sequencing?
___________________________
Anyway, what I'm really interested in is what Software-pipelines you guys use and what you can recommend for denovo Assembly, Alignment, (differential)gene-expression, snp/indel detection?
I already found this list: http://bioinformaticsonline.com/blog...-data-analysis
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