Guys,
I have a specific question about Gene Ontology analysis. I have read a paper where they claim, say, immune response pathway is enriched in the top 500 most differentially expressed genes. I searched it and found its GO ID is GO:0006955. My question is where do you go and download all the genes and its annotations etc so I can easily process them?
I found a place for mouse, ftp://ftp.informatics.jax.org/pub/reports/index.html#go
and the gene_association.mgi file seems to be the one I'm looking for.
Could anyone share your experience with this if you have any?
Thanks!
I have a specific question about Gene Ontology analysis. I have read a paper where they claim, say, immune response pathway is enriched in the top 500 most differentially expressed genes. I searched it and found its GO ID is GO:0006955. My question is where do you go and download all the genes and its annotations etc so I can easily process them?
I found a place for mouse, ftp://ftp.informatics.jax.org/pub/reports/index.html#go
and the gene_association.mgi file seems to be the one I'm looking for.
Could anyone share your experience with this if you have any?
Thanks!
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