HI all
Please how can i interpret indels? i have no previous knowlegde about this.
this is what the data looks like
chr3 4466963 . TGGAG TGGAGGAG 999 PASS AC1=5;AF1=0.4167;DP4=7,197,3,84;DP=347;FQ=999;G3=0.1667,0.8333,8.319e-50;HWE=0.0465;INDEL;MQ=44;MfGt=0/1;MinDP=28;NeqMfGt=1;PV4=1,1.5e-70,2e-112,1 GT:PL: DP:SP:GQ 0/1:93,0,255:33:0:95 0/0:0,122,255:59:0:99 0/1:53,0,241:42:0:55 0/1:139,0,250:59:7:99 0/1:78,0,255:70:3:80 0/1:62,0,238:28:0:64
thank you
Please how can i interpret indels? i have no previous knowlegde about this.
this is what the data looks like
chr3 4466963 . TGGAG TGGAGGAG 999 PASS AC1=5;AF1=0.4167;DP4=7,197,3,84;DP=347;FQ=999;G3=0.1667,0.8333,8.319e-50;HWE=0.0465;INDEL;MQ=44;MfGt=0/1;MinDP=28;NeqMfGt=1;PV4=1,1.5e-70,2e-112,1 GT:PL: DP:SP:GQ 0/1:93,0,255:33:0:95 0/0:0,122,255:59:0:99 0/1:53,0,241:42:0:55 0/1:139,0,250:59:7:99 0/1:78,0,255:70:3:80 0/1:62,0,238:28:0:64
thank you
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