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Old 12-20-2010, 06:39 AM   #1
Location: Connecticut

Join Date: Jun 2009
Posts: 74
Default breakdancer output question

Dear Readers,

I pasted 2 lines of breakdancer output below. According to the manual column 2 and 4 are for recording the reads orientation information that mapped to the anchoring regions. But form the 2 record lines, which are in close vincinity, why is the orientation info different between the 2 records? Perhaps I am not understanding the gist of the meaning of the orientation. Any input is appreciated.

chr1 809757 17+0- chr12 38597545 3+17- CTX -149 99 17 NA|17
chr1 809757 17+9- chr12 38597387 9+0- CTX -149 99 9 NA|9

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