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Old 12-21-2010, 06:43 AM   #2
pickw
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Location: MO

Join Date: Aug 2009
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chr1 809757 17+0- chr12 38597545 3+17- CTX -149 99 17 NA|17

This means 17 plus (+) strand reads at chr1:809757 are discordantly mapped, 0 minus (-) strand reads at chr1:809757 are discordantly; whereas at chr12:38597545, 3 plus strand reads and 17 minus strand reads are discordantly mapped. Out of all these discordantly mapped reads, 17 are paired between these 2 loci, supporting this translocation. So this translocation fuses the + strand of chr1:809757 to the + strand of chr12:38597545.

chr1 809757 17+9- chr12 38597387 9+0- CTX -149 99 9 NA|9

This translocation fuses the plus strand of chr1:809757 to the negative strand of chr12:38597387.

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