Hi,
are there any tools to convert BAM files to VCF (Variant Call Format)? Alternatively, are there any tools to convert pileup files to VCF?
Looking at the VCF specs, VCF is fairly similar to pileup format, so I can probably write a script for this conversion. I am just wondering if something already exists.
Any pointers are much appreciated!
thanks,
Ashwatha.
are there any tools to convert BAM files to VCF (Variant Call Format)? Alternatively, are there any tools to convert pileup files to VCF?
Looking at the VCF specs, VCF is fairly similar to pileup format, so I can probably write a script for this conversion. I am just wondering if something already exists.
Any pointers are much appreciated!
thanks,
Ashwatha.
Comment