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Old 03-15-2014, 08:20 PM   #10
Location: NJ

Join Date: Oct 2012
Posts: 97

I used to do transcripts, but I was told specifically to never to use them again as you will get more gene isoforms information through mapping it to the genome.

Please test this out by using the BAM files that are outputted through Tophat 2 and map it with the whole genome or transcript using NCBI IGV.
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