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Old 11-06-2014, 01:04 PM   #4
tomc
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Location: Oregon

Join Date: Feb 2011
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Hi kenietz

Since each data set can be one or many sequences of any lenght,
the question remains less than fully specified,
but under the assumption that both datasets are composed of many shorter sequences each which represent some logical unit (transcript, illumima read) then yes
you blast the entire representation of b identified by the hit b' against dataset A.

Under different assumptions this could make no sense and you may need to decide what logical unit containing b' to blast against A
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