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Old 01-21-2015, 07:08 PM   #3
Location: Boston

Join Date: Oct 2009
Posts: 65

We have wild type condition A and wild type condition B as well as treated condition A and treated condition B. So, we would like to see changes in gene expression between condition A and condition B, as well as changes in gene expression between wild type and treated.

Will contrast provide us with this ? To me it seems like the analysis is done by the DESeq function and the results function just organizes the output of the DESeq function.
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