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Old 03-03-2015, 03:15 AM   #5
clarissaboschi
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Location: US

Join Date: Apr 2010
Posts: 63
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Thanks lindenb, I will try your script

Your script does maintain the header of the vcf? Because I need.

Actually I want the alternative allele (SNP allele), but sometimes there are different alleles for it, and the first one is the more frequent, so I would like to have only the more frequent alt allele, for example

Chr11_667698 ....C G,A .....
I would like to have
Chr11_667698 ....C G .....

thanks
Clarissa
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