View Single Post
Old 04-24-2015, 08:08 AM   #8
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,077
Default

If you only need the fastq files why aren't you grabbing them directly from the MiSeq (if you have direct access to MiSeq of course)?

They should be in the D:\Illumina\MiSeq Analysis\Flowcell ID\Data\Intensities\BaseCalls directory (if I am remembering path right). Apologies in advance, if use of BaseSpace somehow turns local analysis off.
GenoMax is offline   Reply With Quote