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Old 04-24-2015, 08:08 AM   #8
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,077

If you only need the fastq files why aren't you grabbing them directly from the MiSeq (if you have direct access to MiSeq of course)?

They should be in the D:\Illumina\MiSeq Analysis\Flowcell ID\Data\Intensities\BaseCalls directory (if I am remembering path right). Apologies in advance, if use of BaseSpace somehow turns local analysis off.
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