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Old 08-28-2015, 07:40 AM   #5
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Location: Ottawa, Canada

Join Date: Aug 2015
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Originally Posted by pengchy View Post
try to change "bt2" into "bt2l" in the tophat source file.
@pengchy: Will this work by changing bt2 to bt2l in source?

I am using tophat 2.1.0, still have problem of using bt2l. Any solutions so far? I am working on a very genome, so have to use bt2l. Can I align each chromosome separately, and then merge the bam files?
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