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Old 03-21-2016, 04:53 PM   #8
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Location: SZ

Join Date: Mar 2016
Posts: 7

Originally Posted by mastal View Post
Where do the bam files you are trying to use with lobSTR come from?

Are they unaligned bams, or are they the result of alignment with another aligner?

Have any reads been removed from the data set? For example, reads that didn't align, leaving some reads without a mate?
The bam files I use are alignment of HiSeq reads aligned to the reference genome, removed redundancy and base realignments were done.

Does it matter? And how should I do?

Thank you!
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