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Old 10-26-2016, 05:05 AM   #3
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Location: Allentown

Join Date: Oct 2016
Posts: 6

So I did that and still got the same answer. I needs the .nal file, thats what blast looks for as the Nucleotide database

blastn -query HPV2-C2_E1.fasta -db MV1SDB_a -out testblastout.txt

BLAST Database error: No alias or index file found for nucleotide database [MV1SDB_a] in search path [/Users/richardkliman/Research/HPV/Regina/SRS_Mid_Vagina/SRS014466::]
Richards-Mac-Pro:SRS014466 richardkliman$
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