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Old 08-26-2019, 07:57 PM   #1
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Location: San Diego, California

Join Date: Aug 2019
Posts: 2
Exclamation Cmd line psi-blast help

Hello, I am needing some help with a dilemma I am having with cmd line psi-blast.

I set it to run ten iterations but it core dumps on me, the query sequence is correct and I have all the correct pathways as well as nr databases into my drive. It was suggested to tighten the search settings to increase the stringency. Is there a way to do this?
Also, how do you advise that I access any core dumped files?

Last but certainly not least, is there a cmd line syntax to run a PSI-BLAST using a PSSM generated from the first five iterations of a PSI-BLAST from an initial query sequence? I'm new at this and could really use the help, thank you!
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