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  • Recommendation for CNV detection software in Illumina WGS data for cancer cells

    Can anyone recommend some reliable software for CNV detection in cancer cells for Illumina WGS data?

  • #2
    Hi

    I am the developer of CNAnorm which is designed for normalisation, segmentation, GC correction and plotting of copy number data from very low coverage (~ 0.05X) whole genome sequencing. It also works with higher coverage (obviously takes more time and you will need a few tweeks) and some report using it sucesfully on exome capture data.

    Please read this post where other users posted their questions and I provided some suggestions.

    good luck

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    • #3
      Hi, stefanoberri, I am not able to access the paper for CNAnorm, could you mind to send me the paper in mailbox: [email protected]? I appreciate it !

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      • #4
        Hi, sorry for the late reply.

        Here you can find the preprint of the article and the supplemental material
        Last edited by stefanoberri; 08-15-2012, 08:47 AM.

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        • #5
          I am not able to open the link, could you send the article to me in : [email protected]

          Comment

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