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Old 09-10-2013, 10:52 AM   #3
Location: Utah

Join Date: May 2013
Posts: 44
Default Bowtie_build - internal exception#1

Hello All!

I am having troubles running bowtie_build.
I am running:
bowtie2-build /scratch/annet/Sdata/SSURefSilva.fa SSURef \
> /scratch/annet/Sdata/SSURefSilva.fa

And I am getting this error message:
Reference file does not seem to be a FASTA file
Error: Encountered internal Bowtie 2 exception (#1)
Command: /opt/local/software/Genome/bowtie2/2.0.0-beta7/bin/bowtie2-build /scratch/annet/Sdata/SSURefSilva.fa SSURef

But my fasta file is ok, I know it!

Does anybody know what can be the problem???
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