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Old 09-26-2011, 05:23 AM   #4
Simon Andrews
Location: Babraham Inst, Cambridge, UK

Join Date: May 2009
Posts: 870

Thanks for changing this - this will help us a lot.

If there's any chance you could add a switch to eland to make it write out a single bam file containing just the alignments (the equivalent to the old sorted files) when it is run as part of a pipeline then we'd have all of the functionality back in 1.8 which we had in previous versions, with the benefits of smaller more standard output files.
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