View Single Post
Old 09-26-2011, 05:23 AM   #4
simonandrews
Simon Andrews
 
Location: Babraham Inst, Cambridge, UK

Join Date: May 2009
Posts: 870
Default

Thanks for changing this - this will help us a lot.

If there's any chance you could add a switch to eland to make it write out a single bam file containing just the alignments (the equivalent to the old sorted files) when it is run as part of a pipeline then we'd have all of the functionality back in 1.8 which we had in previous versions, with the benefits of smaller more standard output files.
simonandrews is offline   Reply With Quote