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Old 12-04-2017, 08:25 AM   #3
Location: czech

Join Date: May 2015
Posts: 65

Thanks for the reply. But I see that Tophat and cufflinks pipeline cant be used for Ion torrent data right. Are you sure that I can use these tools?

Can I also use Hisat2, Stringtie and Ballgown?

Some were saying that BBMap is good for alignment for Ion Torrent data.
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