Hi all,
I just mapped the RNA-Seqs by Tophat and got the output file accepted_hit.bam. I also have gtf file. I want to count the reads mapping to rRNA regions and also other. I hope featurecounts can be used. But could anyone please tell me how to give the options and different parameters.
Any reply will be appreciated.
Thank you very much.
I just mapped the RNA-Seqs by Tophat and got the output file accepted_hit.bam. I also have gtf file. I want to count the reads mapping to rRNA regions and also other. I hope featurecounts can be used. But could anyone please tell me how to give the options and different parameters.
Any reply will be appreciated.
Thank you very much.
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