Hi,
I'm currently looking for tools to convert fastq file format from illumina 1.3 to sanger. I googled a little bit and found EMBOSS is capable of handling such tasks. I managed to convert the file format in a single fastq file with the following command:
seqret fastq-illumina::input.fastq fastq-sanger:utput.fastq
However, I failed to find a way to execute this on multiple fastq files at a time. My goal is to generate multiple output fastq files with each corresponding to a single input fastq file. I have about 50 files, and I don't want to write the command 50 times, with each time changing the filenames in the command.
Can anyone help me out? Thanks
Huan
I'm currently looking for tools to convert fastq file format from illumina 1.3 to sanger. I googled a little bit and found EMBOSS is capable of handling such tasks. I managed to convert the file format in a single fastq file with the following command:
seqret fastq-illumina::input.fastq fastq-sanger:utput.fastq
However, I failed to find a way to execute this on multiple fastq files at a time. My goal is to generate multiple output fastq files with each corresponding to a single input fastq file. I have about 50 files, and I don't want to write the command 50 times, with each time changing the filenames in the command.
Can anyone help me out? Thanks
Huan
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