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Old 05-09-2018, 01:09 AM   #6
sahusarika
Junior Member
 
Location: delhi

Join Date: Apr 2015
Posts: 7
Default cufflinks error

hello asier_gonzalez

I am also struggling with the same problem.
I have used HISAT2 for alignment then i followed samtools view -Sb.
* I have used Picard Tools SortSam (option SORT_ORDER=coordinate)
while running cufflinks there was an "errorSAM error on line 45697305: invalid CIGAR operation in cufflinks"

pls help me!
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