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Old 02-24-2015, 05:48 AM   #2
sarvidsson
Senior Member
 
Location: Berlin, Germany

Join Date: Jan 2015
Posts: 137
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Run
Code:
samtools view -S -f 0x100 <file.sam>
to get the multimappers.

Last edited by sarvidsson; 02-24-2015 at 05:54 AM. Reason: too quick
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