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Old 06-07-2018, 06:33 AM   #1
Location: Brussels, Belgium

Join Date: Sep 2011
Posts: 21
Default Subsample regions of too high coverage

Hi all,

Do you think there is an efficient way of downsampling only a few regions of a bam files (in my case the regions with a too high coverage).

The idea, would be too randomly remove reads in regions where the coverage is above a given coverage.

Indeed, in my analyses, those regions cause some steps of the pipeline to become really slow.

Thanks for all your suggestions...
sbrohee is offline   Reply With Quote