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Old 06-18-2012, 03:09 PM   #1
camelbbs
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Location: United States

Join Date: Jun 2011
Posts: 49
Default the insert size in rnaseq

HI I have paired-end rnaseq data in sam files like this:

Code:
DJG84KN1:219:D0R66ACXX:7:1103:17826:20428	147	chr10	158214	255	95M	=	158144	-165	CTCAAAGAGAAAGCTGTAACTGCTGTTATGTGTCACATACCAAGTTGGAATCCATTTGCCACAGTCTAGGTGACCTCAGCTCACACCTGAGTGGA	DDEEEEEEEFFFFFFHHHHHHJJJJJJJJJJJIJJJJIGJJJIHFJJJJJIJJJJJJJJHEJJJJJJJJJJJGJJJJJJJIIHFCHHFFFFFCCB	XA:i:0	MD:Z:95	NM:i:0
can I ask how much is the insert size (or inner distance)?

Last edited by camelbbs; 06-18-2012 at 03:12 PM.
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