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Old 11-14-2011, 12:08 PM   #2
gringer
David Eccles (gringer)
 
Location: Wellington, New Zealand

Join Date: May 2011
Posts: 838
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Does your gene have another isoform that could be taking all the reads? Cufflinks considers isoform abundance in its FPKM calculations, so that might have something to do about it.
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