It doesn't work either
java -Xmx4G -jar /GenoStorage/Software/snpEff_2_0_5d/snpEff.jar eff -c /GenoStorage/Software/snpEff_2_0_5d/snpEff.config -v -onlyCoding true -i vcf -o txt GRCh37.65 varSample02187ATESTE.flt.vcf > snpEff_sample02187A.txt
00:00:00.000 Reading configuration file '/GenoStorage/Software/snpEff_2_0_5d/snpEff.config'
00:00:00.225 done
00:00:00.225 Reading database for genome 'GRCh37.65' (this might take a while)
java.lang.RuntimeException: java.io.FileNotFoundException: /GenoStorage/Software/snpEff_2_0_5d/./data/GRCh37.65/snpEffectPredictor.bin (No such file or directory)
at ca.mcgill.mcb.pcingola.Gpr.readFileSerializedGz(Gpr.java:426)
at ca.mcgill.mcb.pcingola.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:48)
at ca.mcgill.mcb.pcingola.snpEffect.Config.loadSnpEffectPredictor(Config.java:101)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:536)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:244)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:72)
Caused by: java.io.FileNotFoundException: /GenoStorage/Software/snpEff_2_0_5d/./data/GRCh37.65/snpEffectPredictor.bin (No such file or directory)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:137)
at java.io.FileInputStream.<init>(FileInputStream.java:96)
at ca.mcgill.mcb.pcingola.Gpr.readFileSerializedGz(Gpr.java:421)
... 5 more
00:00:00.235 Finishing up
java -Xmx4G -jar /GenoStorage/Software/snpEff_2_0_5d/snpEff.jar eff -c /GenoStorage/Software/snpEff_2_0_5d/snpEff.config -v -onlyCoding true -i vcf -o txt GRCh37.65 varSample02187ATESTE.flt.vcf > snpEff_sample02187A.txt
00:00:00.000 Reading configuration file '/GenoStorage/Software/snpEff_2_0_5d/snpEff.config'
00:00:00.225 done
00:00:00.225 Reading database for genome 'GRCh37.65' (this might take a while)
java.lang.RuntimeException: java.io.FileNotFoundException: /GenoStorage/Software/snpEff_2_0_5d/./data/GRCh37.65/snpEffectPredictor.bin (No such file or directory)
at ca.mcgill.mcb.pcingola.Gpr.readFileSerializedGz(Gpr.java:426)
at ca.mcgill.mcb.pcingola.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:48)
at ca.mcgill.mcb.pcingola.snpEffect.Config.loadSnpEffectPredictor(Config.java:101)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:536)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:244)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:72)
Caused by: java.io.FileNotFoundException: /GenoStorage/Software/snpEff_2_0_5d/./data/GRCh37.65/snpEffectPredictor.bin (No such file or directory)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:137)
at java.io.FileInputStream.<init>(FileInputStream.java:96)
at ca.mcgill.mcb.pcingola.Gpr.readFileSerializedGz(Gpr.java:421)
... 5 more
00:00:00.235 Finishing up
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