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Old 10-06-2019, 10:08 AM   #4
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Location: Eugene, OR

Join Date: May 2013
Posts: 521

Oh my, that's a big one. How much memory is it using?

If you just want a rough assembly, I would do wtdbg2 as you can get a sense of contig lengths without consensus generation. I've done flye with 10X read coverage (to look at how much is chloroplast and bacteria in a dirty sample) and it didn't protest. Sorry, haven't used HGAP.
Providing nextRAD genotyping and PacBio sequencing services.
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