View Single Post
Old 08-14-2013, 01:54 AM   #2
rhinoceros
Senior Member
 
Location: sub-surface moon base

Join Date: Apr 2013
Posts: 372
Default

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.faa.tar.gz

Includes archaea. You could also make bacteria sub db from NR..

1. http://www.ncbi.nlm.nih.gov/protein/...;Organism:exp] > send to: file: gi list
2. blastdb_aliastool -gilist yourList.txt -db nr -out BacteriaOfNr -title BacteriaOfNr -dbtype prot

Another alternative would be to learn to use eutils..

Last edited by rhinoceros; 08-14-2013 at 02:05 AM.
rhinoceros is offline   Reply With Quote