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fkrueger · 12-16-2010, 12:34 AM

Indeed, -m 1 will remove all alignments with more than 1 valid alignment meaning --best --strata --all won't have any effect on the alignment results.

12-16-2010, 12:34 AM	#4
fkrueger Senior Member Location: Cambridge, UK Join Date: Sep 2009 Posts: 625	Indeed, -m 1 will remove all alignments with more than 1 valid alignment meaning --best --strata --all won't have any effect on the alignment results.