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Old 12-16-2010, 12:52 AM   #7
khb
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Location: Oslo

Join Date: Dec 2010
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So the conclusion is to use this parameters:
bowtie hg19 -q input.fastq -m 1 -S bowtie_out
but isn't this the same as
bowtie hg19 -q input.fastq -m 1 --best --strata --all -S bowtie_out if the m 1 would overwrite the other parameters?
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