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  • Warning message- BFAST

    Dear all,

    I am getting the below warning message when trying to run the BFAST program. I would appreciate any help explaining for me the reason for getting this message?

    Thanks.
    =====================

    Reading in reference genome from phi.x.174.fa.nt.brg.
    In total read 1 contigs for a total of 5386 bases
    ************************************************************
    Creating the index...
    ************************************************************
    Warning: startContig was less than zero.
    Defaulting to contig=1 and position=1.
    ************************************************************
    ************************************************************
    Warning: endContig was greater than the number of contigs in the reference genome.
    Defaulting to reference genome's end contig=1 and position=5386.
    ************************************************************

  • #2
    The default is to auto-detect the range you wish to index etc. You can safely ignore these warnings if you were not trying to manually set the region of interest.

    Comment


    • #3
      Thanks for your reply.

      Comment

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