Hi,
I'm running deltablast with the rpsdb database as CDD v3.1 downloaded off ncbi (I ran makeprofiledb on the raw .pssm's to make applicable for deltablast). I am running into warnings like this:
##
Warning: lcl|Query_9517: Warning: Frequency ratios for PSSM are all zeros, frequency ratios for BLOSUM62 will be used during traceback in composition based statistics
##
It is not for all queries.
This is the first time I'm running delta blast, so I'm wondering if this is something to worry about when interpreting the output. Does this just mean there wasn't any conserved domains detected for the particular query?
Any comments greatly appreciated. Thanks.
I'm running deltablast with the rpsdb database as CDD v3.1 downloaded off ncbi (I ran makeprofiledb on the raw .pssm's to make applicable for deltablast). I am running into warnings like this:
##
Warning: lcl|Query_9517: Warning: Frequency ratios for PSSM are all zeros, frequency ratios for BLOSUM62 will be used during traceback in composition based statistics
##
It is not for all queries.
This is the first time I'm running delta blast, so I'm wondering if this is something to worry about when interpreting the output. Does this just mean there wasn't any conserved domains detected for the particular query?
Any comments greatly appreciated. Thanks.
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