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Old 05-08-2015, 09:47 AM   #3
DNATECH
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Location: Davis, CA

Join Date: Mar 2015
Posts: 29
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Hi GenoMax,

Thanks! Currently there are no local duplicate metrics in the SAV viewer and no options in bcl2fastq for flagging or filtering for these cases.
People working with X Ten data get their data already aligned and might be able to use picard etc.? However the HiSeq 3000/4000 will be used for all kinds of applications were alignment based analyses are not an option.
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