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Old 01-09-2018, 10:27 AM   #5
Gorgon_VZ
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Location: Germany

Join Date: Oct 2016
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You should be able to Check this by zoom in to nucleotide Level in igv. If the reads Do Not Match the reference this would be a Hind. I am Not a 100% Sure but i believe igv only uses the coordinates and cigar of the bam and does Not care about matching nucleotides. So maybe it is just a slippage of coordinates between hg19 and 38.
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