Hey there
Has anyone used the MiSeq Reporter Metagenomics Workflow before? Is it worth it? Or is QIIME the absolute way to go?
My problem with the MSR workflow is the fact that I don't know what happens between purity filtering fastq file generation and the start of the taxonomic classification (in terms of quality trimming/chimera checking etc)...no info is available as it is all proprietary and we are struggling to get anything from them.
Any help/ideas/thoughts/comments welcome.
Has anyone used the MiSeq Reporter Metagenomics Workflow before? Is it worth it? Or is QIIME the absolute way to go?
My problem with the MSR workflow is the fact that I don't know what happens between purity filtering fastq file generation and the start of the taxonomic classification (in terms of quality trimming/chimera checking etc)...no info is available as it is all proprietary and we are struggling to get anything from them.
Any help/ideas/thoughts/comments welcome.
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