Hi, all - I'm looking for a way to annotate a list of positions in a genome. Basically, I have a list of positions that looks like this:
chr1 3026294
chr1 30175158
chr2 17717521
...and so on. I want to know:
1) the names of the gene(s) (if any) that overlap that position
2) the orientation of those genes, and
3) which part of the gene the listed position is (5' UTR, second exon, fourth intron, etc.).
I feel like someone must have made something to do this before, but I don't know where to look. Any ideas? Thanks!
chr1 3026294
chr1 30175158
chr2 17717521
...and so on. I want to know:
1) the names of the gene(s) (if any) that overlap that position
2) the orientation of those genes, and
3) which part of the gene the listed position is (5' UTR, second exon, fourth intron, etc.).
I feel like someone must have made something to do this before, but I don't know where to look. Any ideas? Thanks!
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