Hi,
I analyze RNA-Seq data with DESeq2 package and am trying to change the argument 'minReplicatesForReplace'. However, I always get an error message about unused arguments:
I read another thread here about the cooksCutoff argument that it was moved from DESeq() to results(). So I thought that perhaps it's also true for minReplicatesForReplace and tried it but again the same error:
How can I use this argument?
P.S. sessionInfo:
I analyze RNA-Seq data with DESeq2 package and am trying to change the argument 'minReplicatesForReplace'. However, I always get an error message about unused arguments:
Code:
> ddsHTSeq<- DESeq(ddsHTSeq, minReplicatesForReplace = 5) Error in DESeq(ddsHTSeq, minReplicatesForReplace = 5) : unused argument (minReplicatesForReplace = 5)
Code:
res <- results(ddsHTSeq, minReplicatesForReplace = 5) Error in results(ddsHTSeq, minReplicatesForReplace = 5) : unused argument (minReplicatesForReplace = 5)
P.S. sessionInfo:
Code:
> sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats graphics grDevices utils datasets methods [8] base other attached packages: [1] DESeq2_1.0.19 RcppArmadillo_0.4.300.8.0 [3] Rcpp_0.11.2 lattice_0.20-29 [5] Biobase_2.20.1 GenomicRanges_1.12.5 [7] IRanges_1.18.4 BiocGenerics_0.6.0 loaded via a namespace (and not attached): [1] annotate_1.38.0 AnnotationDbi_1.22.6 DBI_0.2-7 [4] genefilter_1.42.0 grid_3.0.1 locfit_1.5-9.1 [7] RColorBrewer_1.0-5 RSQLite_0.11.4 splines_3.0.1 [10] stats4_3.0.1 survival_2.37-7 tools_3.0.1 [13] XML_3.98-1.1 xtable_1.7-3
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