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Old 09-28-2009, 07:52 AM   #187
apfejes
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Location: Oakland, California

Join Date: Feb 2008
Posts: 236
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Hi Ka123$,

Gerald and bustard are files produced by the Illumina Pipeline, as far as I know, and neither one should contain useful information about the origin of a fragment. Only output from an aligner can be used in the context of peak finding.

For a list of formats accepted by FindPeaks, please see the following page:

http://sourceforge.net/apps/mediawik...e=InputFormats

If you're having an error with Eland files, please let me know what it is, and I'll try to fix it.

Anthony
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