hey guys,
I am trying to find fusion junctions using tophat-fusion
I downloaded and installed tophat-fusion. But I am getting an error
tophat-fusion: option --fusion-search not recognized.
Here is the command I followed:
tophat -o tophat_MCF7 -p 8 --fusion-search --bowtie1 --no-coverage-search -r 0 /path/to/h_sapiens/bowtie_index SRR064286_1.fastq SRR064286_2.fastq
Did I do something wrong while installation process?
Any kind of help is greatly appreciated
Thanks
Suz
I am trying to find fusion junctions using tophat-fusion
I downloaded and installed tophat-fusion. But I am getting an error
tophat-fusion: option --fusion-search not recognized.
Here is the command I followed:
tophat -o tophat_MCF7 -p 8 --fusion-search --bowtie1 --no-coverage-search -r 0 /path/to/h_sapiens/bowtie_index SRR064286_1.fastq SRR064286_2.fastq
Did I do something wrong while installation process?
Any kind of help is greatly appreciated
Thanks
Suz
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