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Old 01-22-2014, 12:02 AM   #14
IBseq
Member
 
Location: uk

Join Date: Jul 2012
Posts: 56
Default vfs running

hi everyone
(if anyone is there!!!)

I run the vfs example 1.VFS.sys.check.pl and got nothing. this is the report after i submitted the job:

Make sure BWA is installed and is available in PATH
List::Util qw( min max ) loaded: OK
Bio:B::Sam loaded: OK
Bio::SeqIO loaded: OK
Bio::SearchIO loaded: OK
Bio:B::Sam loaded: OK
AppConfig fails loading.
AppConfig::Getopt fails loading.
Cwd loaded: OK
Exporter loaded: OK
File::Which fails loading.
FileHandle loaded: OK
FindBin loaded: OK
Pod::Usage loaded: OK
Statistics:escriptive loaded: OK
File::Copy loaded: OK
PerlIO::gzip fails loading.
Please check AppConfig is installed properly
Please check AppConfig::Getopt is installed properly
Please check File::Which is installed properly
Please check PerlIO::gzip is installed properly


please any help!!!!

thanks,
ib
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